I noticed though that at the next stoplight, it was making a weird sort of knocking noise.
I rode it straight home and when I got it into my garage let it idle while crawling around the bike listening for the sound. It wasn't making the sound of course so while it was idling in neutral I gently revved the engine and then it appeared. It seems to be coming from the transmission but why would a sound be coming from the transmission if it was in neutral? It is a terrible grinding/knocking sound, but I am 95% it isn't coming from either cylinder, and it is definetly on the right side.
Please tell me my miss shifting didn't cause my worst nightmare (spline failure). I have no idea what I'm going to do though, I had a big trip to Colorado planned in a few weeks and if it's something big I'll just have to cancel I guess.
Anybody have any ideas? I would greatly appreciate any input!!